FAIM Microscope-Specific Resources
Comparing Instruments
Filename: InstrumentComparisonsWithMap.pdf
File Size: 0.38 MB
File Description: A brief comparison of our instruments and their locations.
The Facility offers a free, self-paced online FIJI/ImageJ for Beginners course on Canvas.
In addition to an introduction to FIJI and basic commands, learners will also:
- Make basic measurements
- Use segmentation to make measurements
- Perform background subtraction and other image math
- Visualize 3D images
- Perform basic 3D measurements
Outside of the core modules, specific PlugIn modules also offered include:
- Trainable segmentation and subsequent measurements with Trainable Weka Segmentation and Labkit
- Tracking over time with Trackmate
- An introduction to ImageJ Macro creation for batch processing and analysis
- Colocalization tools (pixel- and object-based) with Coloc2 and JaCoP
To be added to the course or ask questions, email flsimicroscopy@vt.edu with "FIJI Course" as the subject.
Signal Overlap and Associated Checks Guide
Filename: OverlappingSignalGuide.pdf
File Size: 0.21 MB
Changing Signal: Laser Power and Detector Gain Guide
Filename: LaserPowerDetectorGainGuide.pdf
File Size: 0.13 MB
Technical Recordings
- Nikon's 2024 talk about point scanning and spinning disk confocal microscopy can be found here.
- Zeiss's Microscopy & Sample Prep 101, 2026 workshop: Session 1 Video | Session 2 Video
2025 Zeiss Lattice Lightsheet Talk & Workshop
Filename: Zeiss_2025LatticeLightsheetWorkshop.pdf
File Size: 0.14 MB
2025 In-Person ImageJ for Beginners Workshop
Filename: 2025_ImageJ_Workshop.pdf
File Size: 0.36 MB